PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002970.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 142aa MW: 15650.6 Da PI: 7.4638

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002970.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	78.6	8.3e-25	44	89	4	50
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHR 50 +rY+eClkNhAas+Ggh+v GCg fmps geegt +alkC AC+CH Itr_sc002970.1_g00007.1 44 IRYRECLKNHAASTGGHVVNGCGKFMPS-GEEGTLEALKCVACNCHS 89 79***********************9.999************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.0E-23	44	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-16	44	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.6E-23	45	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.568	46	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.94E-5	106	142	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-11	111	142	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MHEGPSNPDP DPDPDPDLSL LNNKATTQQV LPQRFVDTDP TTLIRYRECL KNHAASTGGH 60 VVNGCGKFMP SGEEGTLEAL KCVACNCHSK GIRPESSSED LNAGGGQGLM QVLSSKKRFR 120 TKFTQQQKQQ MHEFAEKIGW RI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002886165.1	3e-36	ATHB24
Swissprot	Q9ZPW7	3e-32	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	D7LBB2	3e-36	D7LBB2_ARALL; ATHB24
STRING	scaffold_304185.1	9e-36	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1105	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	4e-23	homeobox protein 24